Molecular evolution and population genetics of a Gram-negative binding protein gene in the malaria vector Anopheles gambiae (sensu lato)
Clarifying the role of the innate immune system of the malaria vector Anopheles gambiae is a potential way to block the development of the Plasmodium parasites. Pathogen recognition is the first step of innate immune response, where pattern recognition proteins like GNBPs play a central role. We analysed 70 sequences of the protein coding gene GNBPB2 from two species, Anopheles gambiae (s.s.) and An. coluzzii, collected in six African countries. We detected 135 segregating sites defining 63 distinct haplotypes and 30 proteins. Mean nucleotide diversity (π) was 0.014 for both species. We found no significant genetic differentiation between species, but a significant positive correlation between genetic differentiation and geographical distance among populations. Species status seems to contribute less for the molecular differentiation in GNBPB2 than geographical region in the African continent (West and East). Purifying selection was found to be the most common form of selection, as in many other immunity-related genes. Diversifying selection may be also operating in the GNBPB2 gene.
Keywords
Anopheles gambiae; Anopheles coluzzii; Gram-negative binding; Protein gene; Glucan binding protein gene; Innate immune system| Item Type | Dataset |
|---|---|
| Resource Type |
Resource Type Resource Description Dataset UNSPECIFIED |
| Capture method | Experiment |
| Date | 23 September 2016 |
| Language(s) of written materials | English |
| Creator(s) | Salgueiro, P; Lopes, AS; Mendes, C; Charlwood, JD; Arez, AP; Pinto, J and Silveira, H |
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Dept of Disease Control |
| Participating Institutions | Global Health and Tropical Medicine Centre (GHTM), Unidade de Parasitologia Médica, Instituto de Higiene e Medicina Tropical (IHMT), Universidade Nova de Lisboa; London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Funders |
Project Funder Grant Number Funder URI |
| Date Deposited | 11 Oct 2016 10:19 |
| Last Modified | 28 Sep 2018 21:18 |
| Publisher | Parasites & Vectors |
Data / Code
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subject - Data
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- Available under Creative Commons: Attribution 3.0
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info - Alignment of polymorphic positions in GNBP2 after exclusion of all gaps (indels). Dots indicate identity with corresponding base of the first sequence. Position number is indicated above each base & species affiliation on the left of each sequence (Excel)
grid_on - application/vnd.openxmlformats-officedocument.spreadsheetml.sheet
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- 58kB
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subject - Data
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- Available under Creative Commons: Attribution 3.0
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info - Alignment of polymorphic positions in GNBP2 after exclusion of all gaps (indels). Dots indicate identity with corresponding base of the first sequence. Position number is indicated above each base and species affiliation on the left of each sequence (CSV)
description - text/plain
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- 30kB
Documentation
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subject - Documentation
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- Available under Creative Commons: Attribution 3.0
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info - Mosquito samples used by study
description - application/vnd.openxmlformats-officedocument.wordprocessingml.document
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- 18kB
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subject - Documentation
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- Available under Creative Commons: Attribution 3.0
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info - Genetic diversity and neutrality tests for the GNBPB2 gene in An. gambiae (s.s.) and An. coluzzii
description - application/vnd.openxmlformats-officedocument.wordprocessingml.document
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- 33kB