katholt/srst2
Inouye, M; Dashnow, H; Pope, B; Wick, R and Holt, KE
(2021).
katholt/srst2.
[Dataset].
Github.
https://github.com/katholt/srst2
(2021).
katholt/srst2.
[Dataset].
Github.
https://github.com/katholt/srst2
Short Read Sequence Typing for Bacterial Pathogens. This program is designed to take Illumina sequence data, a MLST database and/or a database of gene sequences (e.g. resistance genes, virulence genes, etc) and report the presence of STs and/or reference genes.
Keywords
Short Read Sequence; Bacterial pathogens| Item Type | Dataset |
|---|---|
| Resource Type |
Resource Type Resource Description Software Python, R code |
| Capture method | Other |
| Date | 20 June 2021 |
| Language(s) of written materials | English |
| Creator(s) |
Inouye, M; Dashnow, H; Pope, B; Wick, R and Holt, KE
|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Department of Infection Biology |
| Research Centre | Antimicrobial Resistance Centre (AMR) |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Date Deposited | 03 Oct 2022 13:14 |
| Last Modified | 16 Dec 2025 10:41 |
| Publisher | Github |
No files available. Please consult associated links.
