Outgroups used for phylogenetic tree rooting
Dyson, ZA
; Malau, E; Horwood, PF; Ford, R; Siba, V; Yoannes, M; Pomat, W; Passey, M; Judd, LM; Ingle, DJ; Williamson, DA; Dougan, G; Greenhill, AR and Holt, KE
(2022).
Outgroups used for phylogenetic tree rooting.
[Dataset].
PLOS Neglected Tropical Diseases.
https://doi.org/10.1371/journal.pntd.0010306.s007
; Malau, E; Horwood, PF; Ford, R; Siba, V; Yoannes, M; Pomat, W; Passey, M; Judd, LM; Ingle, DJ; Williamson, DA; Dougan, G; Greenhill, AR and Holt, KE
(2022).
Outgroups used for phylogenetic tree rooting.
[Dataset].
PLOS Neglected Tropical Diseases.
https://doi.org/10.1371/journal.pntd.0010306.s007
Table includes alleles from representative non-genotype 2.1.7 sequences as outgroups for phylogenetic tree rooting.
Keywords
Salmonella typhi; Genomics; Antimicrobial resistance; Phylogenetics; Typhoid; Sequence alignment; Phylogenetic analysis; Fevers| Item Type | Dataset |
|---|---|
| Resource Type |
Resource Type Resource Description Dataset Quantitative |
| Capture method | Unknown |
| Collection Period |
From To 1980 2010 |
| Date | 28 March 2022 |
| Geographical area covered (offline during plugin upgrade) |
North East South West -6.76889 144.331 -6.76889 144.331 |
| Language(s) of written materials | English |
| Creator(s) |
Dyson, ZA; Malau, E; Horwood, PF; Ford, R; Siba, V; Yoannes, M; Pomat, W; Passey, M; Judd, LM; Ingle, DJ; Williamson, DA; Dougan, G; Greenhill, AR and Holt, KE
|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Department of Infection Biology |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom; Federation University, Churchill, Australia; James Cook University, Townsville, Australia; Papua New Guinea Institute of Medical Research, Goroka, Papua New Guinea; University of Sydney, Lismore, Australia; Monash University, Melbourne, Australia; The University of Melbourne at The Peter Doherty Institute for Infection and Immunity, Melbourne, Australia; University of Cambridge, Cambridge, United Kingdom |
| Funders |
Project Funder Grant Number Funder URI Emerging Leadership Fellowship GNT1195210 http://dx.doi.org/10.13039/501100000925 Emerging Leadership Fellowship GNT1174555 http://dx.doi.org/10.13039/501100000925 UNSPECIFIED UNSPECIFIED http://dx.doi.org/10.13039/100008717 |
| Date Deposited | 09 Dec 2022 10:23 |
| Last Modified | 09 Oct 2025 12:39 |
| Publisher | PLOS Neglected Tropical Diseases |
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