Global Typhoid Genomics Consortium 2022 - Genome Assemblies
Holt, KE
(2023).
Global Typhoid Genomics Consortium 2022 - Genome Assemblies.
[Dataset].
Monash University.
https://doi.org/10.26180/21431883.v1
(2023).
Global Typhoid Genomics Consortium 2022 - Genome Assemblies.
[Dataset].
Monash University.
https://doi.org/10.26180/21431883.v1
Whole genome assemblies of Salmonella enterica serovar Typhi assembled for the Global Typhoid Genomics Consortium paper: "Global diversity and antimicrobial resistance of typhoid fever pathogens: insights from 13,000 Salmonella Typhi genomes" (BioRxiv, 2022). Total n=13,000 genomes, each is gzipped fasta format and then grouped into tar balls based on genotype. Genomes are listed in CSV file TGC_data.csv which includes source and quality information, accessions for raw reads, and genome-derived genotype and AMR variables.
Keywords
Typhoid fever; Genomic Epidemiology; genome assembly; antimicrobial resistance| Item Type | Dataset |
|---|---|
| Resource Type |
Resource Type Resource Description Dataset Quantitative |
| Capture method | Experiment: Laboratory |
| Date | 9 February 2023 |
| Language(s) of written materials | English |
| Creator(s) |
Holt, KE
|
| LSHTM Faculty/Department | Faculty of Infectious and Tropical Diseases > Department of Infection Biology |
| Participating Institutions | London School of Hygiene & Tropical Medicine, London, United Kingdom |
| Funders |
Project Funder Grant Number Funder URI NHMRC Investigator Grant GNT1195210 http://dx.doi.org/10.13039/501100000925 |
| Date Deposited | 14 Sep 2023 13:22 |
| Last Modified | 16 Sep 2025 08:51 |
| Publisher | Monash University |
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