In Silico Spoligotyping

Coll, F; Mallard, K; Preston, M; Bentley, S; Parkhill, J; Mcnerney, R; Martin, N and Clark, T (2012). In Silico Spoligotyping. [Dataset]. London School of Hygiene & Tropical Medicine, London, United Kingdom. http://pathogenseq.lshtm.ac.uk/
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Spoligotyping is designed to address TB epidemiology and diagnosis by clustering samples into strain-types using differential fingerprinting patterns. Whilst advances in sequencing technologies are leading to whole genome bacterial characterisation, spoligotyping is still a technology of choice in the field. To bridge the gap, we have developed SpolPred, software to predict the spoligotype from raw sequence reads.

Keywords

Spoligotyping; Mycobacterium tuberculosis; Tuberculosis

Item Type Dataset
Resource Type
Resource Type
Resource Description
Dataset
UNSPECIFIED
Capture method Other
Date 2012
Language(s) of written materials English
Creator(s) Coll, F; Mallard, K; Preston, M; Bentley, S; Parkhill, J; Mcnerney, R; Martin, N and Clark, T
LSHTM Faculty/Department Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology (-2023)
Faculty of Infectious and Tropical Diseases > Dept of Pathogen Molecular Biology (-2019)
Participating Institutions London School of Hygiene & Tropical Medicine, London, United Kingdom
Date Deposited 09 Jan 2018 12:51
Last Modified 28 Sep 2018 21:20
Publisher London School of Hygiene & Tropical Medicine

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