Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data

Sobkowiak, B; Glynn, JR; Houben, Rein M. G. J.; Mallard, K; Phelan, JE; Guerra-Assunção, JA; Banda, L; Mzembe, T; Viveiros, M; McNerney, R; Parkhill, J; Crampin, AC and Clark, TG (2018). Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. [Dataset]. Figshare, London, United Kingdom. https://doi.org/10.6084/m9.figshare.6968636.v1
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Strain information and full results table for clinically-derived Malawi samples, in silico replicate samples and Portuguese replicate samples. Lineage, total number of SNPs, number of heterozygous sites and the mixture analysis result for both Bayesian clustering and heterozygous sites approaches is included for each sample

Keywords

Mycobacterium tuberculosis; Tuberculosis; Bioinformatics; Epidemiology; Genomic analysis; Mixed infection

Item Type Dataset
Resource Type
Resource Type
Resource Description
Dataset
UNSPECIFIED
Capture method Experiment
Date 14 August 2018
Geographical area covered (offline during plugin upgrade)
North Latitude
East Longitude
South Latitude
West Longitude
-9.88973
34.8227
-14.4314
33.3725
Language(s) of written materials English
Creator(s) Sobkowiak, B; Glynn, JR; Houben, Rein M. G. J.; Mallard, K; Phelan, JE; Guerra-Assunção, JA; Banda, L; Mzembe, T; Viveiros, M; McNerney, R; Parkhill, J; Crampin, AC and Clark, TG
LSHTM Faculty/Department Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology (-2023)
Faculty of Epidemiology and Population Health > Dept of Population Health (2012- )
Faculty of Infectious and Tropical Diseases > Dept of Pathogen Molecular Biology (-2019)
Participating Institutions London School of Hygiene & Tropical Medicine, London, United Kingdom
Funders
Project
Funder
Grant Number
Funder URI
UNSPECIFIED
Medical Research Council
UNSPECIFIED
UNSPECIFIED
Date Deposited 28 Aug 2018 10:49
Last Modified 28 Sep 2018 21:20
Publisher Figshare

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