Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code

Kucharski, A and Edmunds, J (2015). Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code. [Dataset]. London School of Hygiene & Tropical Medicine, London, United Kingdom. 10.1371/journal.pcbi.1004154.s010.
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Simulation and inference code written in R which generates stochastic multi type outbreaks from a two-class mixing matrix. The inference model generates maximum likelihood estimates of R0 and S from outbreak size data.

Keywords

Age groups; Immunity; Respiratory infections; Infectious disease epidemiology; Influenza; Monkeypox; Simulation and modeling; Pathogens

Item Type Dataset
Resource Type
Resource Type
Resource Description
Dataset
UNSPECIFIED
Capture method Simulation
Date 10 April 2015
Language(s) of written materials English
Creator(s) Kucharski, A and Edmunds, J
LSHTM Faculty/Department Faculty of Epidemiology and Population Health > Dept of Infectious Disease Epidemiology (-2023)
Participating Institutions London School of Hygiene & Tropical Medicine
Date Deposited 30 Oct 2015 16:20
Last Modified 28 Sep 2018 21:17
Publisher London School of Hygiene & Tropical Medicine

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Study Instrument

S1_Code_Simulation_and_inference.txt
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Study Instrument
Available under Creative Commons: Attribution 3.0
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Simulation and inference code
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