LSHTM Organisational Structure (706)

Faculty of Epidemiology and Population Health (441)

Dept of Infectious Disease Epidemiology (-2023) (156) Data Creators(s) Item Type No Grouping

A

Repository for manuscript: "Demographics, perceptions, and socio-economic factors affecting influenza vaccination among adults in the United States". (2018) Abbas, Kaja M.; Kang, Gloria J.; Chen, Daniel; Werre, Stephen R.; Marathe, Achla

Primary macrophages and J774 cells respond differently to infection with Mycobacterium tuberculosis. (2017) Andreu, Nuria; Phelan, Jody; de Sessions, Paola F; Cliff, Jackie M.; Clark, Taane; Hibberd, Martin

Ecological Study of HIV Infection and Hypertension in Sub-Saharan Africa: Is There a Double Burden of Disease? (2016) Angkurawaranon, C.; Nitsch, Dorothea; Larke, Natasha; Rehman, Andrea M.; Smeeth, Liam; Addo, Juliet

Genome-scale comparison of expanded gene families in Plasmodium ovale wallikeri and Plasmodium ovale curtisi with Plasmodium malariae and with other Plasmodium species. (2016) Ansari, Hifzur Rahman; Templeton, Thomas J.; Subudhi, Amit Kumar; Ramaprasad, Abhinay; Tang, Jianxia; Lu, Feng; Naeem, Raeece; Hashish, Yasmeen; Oguike, Mary C.; Benavente, Ernest Diez; Clark, Taane G.; Sutherland, Colin J.; Barnwell, John W.; Culleton, Richard; Cao, Jun; Pain, Arnab folder_zip

Data from: Effective population size of malaria mosquitoes: large impact of vector control. (2013) Athrey, Giridhar; Hodges, Theresa K; Reddy, Michael R; Overgaard, Hans; Matias, Abrahan; Ridl, Frances C; Kleinschmidt, Immo; Caccone, Adalgisa; Slotman, Michel A folder_zip

Data from: Seasonal influenza vaccination delivery through community pharmacists in England: evaluation of the London pilot. (2015) Atkins, Katherine; Vanhoek, Albert; Watson, Conall; Baguelin, Marc; Choga, Lethiwe; Patel, Anika; Raj, Thara; Jit, Mark; Griffiths, Ulla description

B

Unintended childbearing and family welfare in rural Malawi. (2016) Baschieri, Angela

PhyloTrack. (2015) Benavente, Ernest; Coll, Francesc; Furnham, Nick; Mcnerney, Ruth; Glynn, Judith; Campino, Susana; Pain, Arnab; Mohareb, Fady R; Clark, Taane

Global and regional prevalence of neural tube defects estimates in 2015: Data sources, methods and results. (2017) Blencowe, Hannah grid_on

National, regional, and worldwide estimates of stillbirth rates in 2015, with trends from 2000: a systematic analysis. (2015) Blencowe, Hannah; Cousens, Simon; Bianchi jassir, Fiorella; Say, Lale; Chou, Doris; Mathers, Colin; Hogan, Dan; Shiekh, Suhail; Qureshi, Zeshan; You, Danzhen; Lawn, Joy description

Data for: "Rewards and challenges of providing HIV testing and counselling services: health worker perspectives from Burkina Faso, Kenya and Uganda". (2014) Bott, Sarah; Neuman, Melissa; Helleringer, Stephane; Desclaux, Alice; Asmar, Khalil El; Obermeyer, Carla Makhlouf; MATCH Study Group

Data from: A systematic review and meta-analysis of seroprevalence surveys of ebolavirus infection. (2017) Bower, Hilary; Glynn, Judith description

Data for: "Does azithromycin given to women in labour decrease ocular bacterial infection in neonates? A double-blind, randomized trial". (2017) Burr, Sarah E.; Camara, Bully; Oluwalana, Claire; Bojang, Ebrima; Bottomley, Christian; Bojang, Abdoulie; Bailey, Robin L.; D’alessandro, Umberto; Roca, Anna description

C

Screening and treatment of malaria in pregnancy in West Africa. (2015) Cairns, Matthew; Woukeu, Arouna; Tagbor, Harry folder_zip

Potential for large outbreaks of Ebola virus disease: Supplementary Data. (2014) Camacho, Anton; Kucharski, Adam; Funk, Sebastian; Breman, J; Piot, Peter; Edmunds, John

Attitudes and Behaviours to Antimicrobial Prescribing following introduction of a Smartphone App. (2016) Cameron, D William; Panesar, Preet; Jones, Alasdair; Aldous, Alicia; Kranzer, Katharina; Halpin, Eamus; Fifer, Helen; Macrae, Bruce; Curtis, Carmel; Pollara, Gabriele

Length of Stay After Childbirth in 92 Countries and Associated Factors in 30 Low- and Middle-Income Countries: Compilation of Reported Data and a Cross-sectional Analysis from Nationally Representative Surveys. (2016) Campbell, Oona; Cegolon, Luca; Macleod, David; Benova, Lenka

The impact of an intervention to introduce malaria rapid diagnostic tests on fever case management in a high transmission setting in Uganda: A mixed-methods cluster-randomized trial (PRIME). (2017) Chandler, Clare; Webb, Emily L.; Maiteki-Sebuguzi, Catherine; Nayiga, Susan; Nabirye, Christine; Diliberto, Deborah; Ssemmondo, Emmanuel; Dorsey, Grant; Kamya, Moses R.; Staedke, Sarah G.

Friendship Bench trial: lay worker training in problem-solving therapy to reduce symptoms of common mental disorders. (2015) Chibanda, Dixon; Munetsi, Epiphany; Weiss, Helen; Simms, Victoria; Dzapasi, Lloyd; Chapoterera, Georgina; Goba, Nyaradzo; Gumunyu, Tichaona; Verhey, Ruth; Rusakaniko, Simbarashe; Abas, Melanie; Araya, Ricardo; Gibson, Lorna; Bere, Concilia description

Karonga HDSS INDEPTH Core Dataset 2003 - 2011. (2015) Chihana, Menard; Crampin, Amelia C.

Malawi - Karonga HDSS INDEPTH Core Dataset 2003 - 2012 Release 2015. (2015) Chihana, Menard; Crampin, Amelia C.

Investigating the pertussis resurgence in England and Wales, and options for future control. (2016) Choi, Yoon Hong; Campbell, Helen; Amirthalingam, Gayatri; Van Hoek, Albert Jan; Miller, Elizabeth grid_on

Initial Accuracy of HIV Rapid Test Kits Stored in Suboptimal Conditions and Validity of Delayed Reading of Oral Fluid Tests. (2016) Choko, Augustine; Webb, Emily; Corbett, Elizabeth description

Uptake, accuracy, safety and linkage into care over two years of promoting annual self-testing for HIV in Blantyre, Malawi: a community-based prospective study. (2015) Choko, Augustine; Webb, Emily; Corbett, Liz description

Mycobacterium tuberculosis Nonthaburi genotype raw reads. (2016) Coker, Olabisi Oluwabukola; Chaiprasert, Angkana; Ngamphiw, Chumpol; Tongsima, Sissades; Regmi, Sanjib Mani; Clark, Taane; Ong, Rick Twee Hee; Teo, Yik-Ying; Prammananan, Therdsak; Palittapongarnpim, Prasit

In Silico Spoligotyping. (2012) Coll, Francesc; Mallard, K; Preston, MD; Bentley, S; Parkhill, Julian; Mcnerney, Ruth; Martin, N; Clark, Taane

Data for: "A robust SNP barcode for typing Mycobacterium tuberculosis complex strains". (2014) Coll, Francesc; Mcnerney, Ruth; Guerra-Assunção, José Afonso; Glynn, Judith R.; Perdigão, João; Viveiros, Miguel; Portugal, Isabel; Pain, Arnab; Martin, Nigel; Clark, Taane G.

TB Profiler. (2015) Coll, Francesc; Mcnerney, Ruth; Preston, Mark D.; Guerra-assunção, José Afonso; Warry, Andrew; Hill-Cawthorne, Grant; Mallard, Kim; Nair, Mridul; Miranda, Anabela; Alves, Adriana; Perdigão, João; Viveiros, Miguel; Portugal, Isabel; Hasan, Zahra; Hasan, Rumina; Glynn, Judith; Martin, Nigel; Pain, Arnab; Clark, Taane folder_zip

PolyTB: A web-based resource designed to explore Mycobacterium tuberculosis complex (MTBC) genomic variation at a global scale. (2014) Coll, Francesc; Preston, Mark; Guerra-Assunção, José Afonso; Hill-Cawthorn, Grant; Harris, David; Perdigão, João; Viveiros, Miguel; Portugal, Isabel; Drobniewski, Francis; Gagneux, Sebastien; Glynn, Judith R.; Pain, Arnab; Parkhill, Julian; McNerney, Ruth; Martin, Nigel; Clark, Taane

Productivity, family planning and reproductive health in Burkina Faso: the PopDev study. (2015) Cresswell, Jenny; Drabo, Seydou; Filippi, Veronique; Ganaba, Rasmané; Guissou, Rosemonde; Ilboudo, Patrick; Ouedrago, Denis; Powell-Jackson, Timothy; Somé, Henri; Soubeiga, André; Storeng, Katerini; Yaogo, Maurice

Alive & Thrive Evaluation in Burkina Faso: endline data. (2018) Cresswell, Jenny; Filippi, Veronique; Ganaba, Rasmané; Diallo, Hama Abdoulaye; Sarrassat, Sophie; Somé, Henri

Alive & Thrive Evaluation in Burkina Faso: baseline data. (2017) Cresswell, Jenny; Ganaba, Rasmané; Sarrassat, Sophie; Cousens, Simon; Somé, Henri; Diallo, Abdoulaye Hama; Filippi, Veronique

D

Replication and re-analysis of a Kenyan stepped-wedge trial – Analysis files. (2015) Davey, Calum; Aiken, Alexander; Hayes, Richard; Hargreaves, James

Zambia Signal Functions study 2016 dataset. (2017) Dennis, Mardieh; Chelwa, Nachela; Owolabi, Onikepe; Cresswell, Jenny; Filippi, Veronique; Campbell, Oona

Pathways to increased coverage: an analysis of time trends in contraceptive need and use among adolescents and young women in Kenya, Rwanda, Tanzania, and Uganda. (2017) Dennis, Mardieh; Radovich, Emma; Wong, Kerry; Owolabi, Onikepe; Cavallaro, Francesca; Mbizvo, Michael T.; Binagwaho, Agnes; Waiswa, Peter; Lynch, Caroline; Benova, Lenka

Is Beta Radiation Better than 5 Flurouracil as an Adjunct for Trabeculectomy Surgery When Combined with Cataract Surgery? A Randomised Controlled Trial. (2016) Dhalla, Kazim; Cousens, Simon; Bowman, Richard; Wood, Mark; Murdoch, Ian grid_on

Analysis of nuclear and organellar genomes of Plasmodium knowlesi in humans reveals ancient population structure and recent recombination among host-specific subpopulations. (2017) Diez Benavente, Ernest; Florez de Sessions, Paola; Moon, Robert W.; Holder, Anthony A.; Blackman, Michael J.; Roper, Cally; Drakeley, Christopher J.; Pain, Arnab; Sutherland, Colin J.; Hibberd, Martin L.; Campino, Susana; Clark, Taane G.

Age- and Sex-Specific Social Contact Patterns and Incidence of Mycobacterium tuberculosis Infection: Interview Questionnaire. (2015) Dodd, Peter J; Looker, Clare; Plumb, Ian D.; Bond, Virginia; Schaap, Ab; Shanaube, Kwame; Muyoyeta, Monde; Vynnycky, Emilia; Godfrey-faussett, Peter; Corbett, Elizabeth; Beyers, Nulda; Ayles, Helen; White, Richard

Productivity, family planning and reproductive health in Burkina Faso: PopDev qualitative data. (2015) Drabo, Seydou; Kagambega, Aline; Keita, Assita; Kontiebo, Sonia; Montel, Lisa; Filippi, Veronique; Soubeiga, André; Storeng, Katerini; Da, Sylvestre; Allahissem, Carine; Gali Gali, Idriss; Yaogo, Maurice folder_zip

Malawi - Karonga HDSS INDEPTH Core Dataset 2003 - 2014 (Release 2016). (2016) Dube, Albert; Crampin, Amelia C.

Malawi - Karonga HDSS INDEPTH Core Dataset 2003-2015 (Release 2017). (2017) Dube, Albert; Crampin, Amelia C.

E

Computer code of the coinfection model. (2018) Eggo, Rosalind M. description

F

Effectiveness of electronic reminders to improve medication adherence in tuberculosis patients: a cluster-randomised trial. (2013) Fielding, Katherine; Lewis, James; Jiang, Shiwen

The effects of obstetric complications and their costs on the long-term economic and social well being of women and their families. (2016) Filippi, Veronique

Mobile phone data highlights the role of mass gatherings in the spreading of cholera outbreaks. (2016) Finger, Flavio; Genolet, Tina; Mari, Lorenzo; de Magny, Guillaume Constantin; Manga, Noël Magloire; Rinaldo, Andrea; Bertuzzo, Enrico

Aggregate data for "Towards 90-90: Findings after two years of the HPTN 071 (PopART) cluster-randomized trial of a universal testing-and-treatment intervention in Zambia". (2018) Floyd, Sian; Ayles, Helen; Schaap, Albertus; Shanaube, Kwame; MacLeod, David; Phiri, Mwelwa; Griffith, Sam; Bock, Peter; Beyers, Nulda; Fidler, Sarah; Hayes, Richard

iGugu Main Study Data PLOS Medicine. (2017) Francis, Suzanna C

Data for: "Immune activation in the female genital tract: Expression profiles of soluble proteins in women at high risk for HIV infection". (2015) Francis, Suzanna C; Hou, Yanwen; Baisley, Kathy; Van de wijgert, Janneke; Watson-Jones, Deborah; Ao, Trong T; Herrera, Carolina; Maganja, Kaballa; Andreasen, Aura; Coulton, Gary R; Hayes, Richard J; Shattock, Robin J

Socialmixr: Social Mixing Matrices for Infectious Disease Modelling. (2018) Funk, Sebastian

G

Asymptomatic infection and family contact patterns in households of Ebola Virus Disease survivors, Sierra Leone 2015. (2017) Glynn, Judith R.; Bower, Hilary; Houlihan, Catherine; Oza, Shefali; Checchi, Francesco; Johnson, Sembia; Turay, Cecilia; Sesay, Daniel; Mansaray, Saidu H.; Kamara, Osman; Kamara, Joshua A.; Bangura, Mohamed S.; Montesano, Carla; Dicks, Steve; Samuel, Dhan; Tedder, Richard; Sebba, Charles

Data for "HANDS project - Hand-hygiene of Attendants for Newborn Deliveries and Survival". (2018) Gon, Giorgia description

H

Diagnostic Accuracy of Lateral Flow Urine LAM Assay for TB Screening of Adults with Advanced Immunosuppression Attending Routine HIV Care in South Africa. (2016) Hanifa, Yasmeen; Fielding, Katherine; Chihota, Violet N.; Adonis, Lungiswa; Charalambous, Salome; Karstaedt, Alan; McCarthy, Kerrigan; Nicol, Mark P.; Ndlovu, Nontobeko T.; Sahid, Faieza; Churchyard, Gavin; Grant, Alison D.

Data for: "The utility of repeat Xpert MTB/RIF testing to diagnose tuberculosis in HIV-positive adults with initial negative result". (2016) Hanifa, Yasmeen; Fielding, Katherine; Grant, Alison D.; Churchyard, Gavin J.

XPHACTOR Clinical Score dataset. (2016) Hanifa, Yasmeen; Fielding, Katherine; Grant, Alison D.; Churchyard, Gavin J.

Additional files for: "A cluster randomized controlled trial to assess the impact on intimate partner violence of a 10-session participatory gender training curriculum delivered to women taking part in a group-based microfinance loan scheme in Tanzania (MAISHA CRT01): study protocol". (2018) Harvey, Sheila; Lees, Shelley; Mshana, Gerry; Pilger, Daniel; Hansen, Christian; Kapiga, Saidi; Watts, Charlotte

A universal testing and treatment intervention to improve HIV control: One-year results from intervention communities in Zambia in the HPTN 071 (PopART) cluster-randomised trial. (2017) Hayes, Richard; Floyd, Sian; Schaap, Ab; Shanaube, Kwame; Bock, Peter; Sabapathy, Kalpana; Griffith, Sam; Donnell, Deborah; Piwowar-Manning, Estelle; El-Sadr, Wafaa; Beyers, Nulda; Ayles, Helen; Fidler, Sarah description

PrimedRPA: Primer design for Recombinase polymerase amplification assays. (2018) Higgins, Matthew; Ravenhall, Matt; Ward, Daniel; Phelan, Jody; Ibrahim, Amy; Forrest, Matthew S; Clark, Taane G; Campino, Susana; Hancock, John

Social Contact Data for Vietnam. (2018) Horby, Peter; Thai, Pham Quang; Hens, Niel; Yen, Nguyen Thi Thu; Mai, Le Quynh; Thoang, Dang Dinh; Linh, Nguyen Manh; Huong, Nguyen Thu; Alexander, Neal; Edmunds, W. John; Duong, Tran Nhu; Fox, Annette; Hien, Nguyen Tran

A Bayesian approach to understanding gender differences in tuberculosis disease burden. (2018) Horton, Katherine C; Sumner, Tom; Houben, Rein M G J; Corbett, Elizabeth L; White, Richard G

J

rbi: R Interface to LibBi. (2017) Jacob, Pierre E.; Lee, Anthony; Murray, Lawrence; Funk, Sebastian

Dataset for "Confirmation of cholera by rapid diagnostic test amongst patients admitted to the cholera treatment centre in Uvira, Democratic Republic of the Congo". (2018) Jeandron, Aurelie; Cumming, Oliver; Rumedeka, Baron Bashige; Saidi, Jaime Mufitini; Cousens, Simon

National Survey of Sexual Attitudes and Lifestyles, 2010-2012. (2015) Johnson, Anne

National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Biological Data: Secure Access. (2017) Johnson, Anne; Mercer, C

National Survey of Sexual Attitudes and Lifestyles, 2010-2012: Secure Access. (2017) Johnson, Anne; Mercer, C.

K

Autopsy Prevalence of Tuberculosis and Other Potentially Treatable Infections among Adults with Advanced HIV Enrolled in Out-Patient Care in South Africa: Lesedi Kamoso study data. (2016) Karat, Aaron S.; Omar, Tanvier; von Gottberg, Anne; Tlali, Mpho; Chihota, Violet N.; Churchyard, Gavin J.; Fielding, Katherine L.; Johnson, Suzanne; Martinson, Neil A.; McCarthy, Kerrigan; Wolter, Nicole; Wong, Emily B.; Charalambous, Salome; Grant, Alison D.

Measuring mortality due to HIV-associated tuberculosis among adults in South Africa: comparing verbal autopsy, minimally-invasive autopsy, and research data. Data from the Lesedi Kamoso study. (2016) Karat, Aaron; Tlali, Mpho; Fielding, Katherine; Charalambous, Salome; Chihota, Violet N.; Churchyard, Gavin J.; Hanifa, Yasmeen; Johnson, Suzanne; McCarthy, Kerrigan; Martinson, Neil A.; Omar, Tanvier; Kahn, Kathleen; Chandramohan, Daniel; Grant, Alison D. grid_on

Physical Activity in Deprived Communities in London: Examining Individual and Neighbourhood-Level Factors. (2013) Kazembe, Lawrence; Watts, Paul; Phillips, Gemma; Petticrew, Mark; Hayes, Richard; Bottomley, Christian; Yu, Ge; Schmidt, Elena; Tobi, Patrick; Moore, Derek; Frostick, Caroline; Lock, Karen; Renton, Adrian description

Replication Data for: Crude childhood vaccination coverage in West Africa: trends and predictors of completeness. (2017) Kazungu, Jacob S.; Adetifa, Ifedayo

Data for: "From kitchen to classroom: Assessing the impact of cleaner burning biomass-fuelled cookstoves on primary school attendance in Karonga district, northern Malawi". (2018) Kelly, Christine; Dube, Albert; Mortimer, Kevin html

Antiretroviral therapy, high-risk human papillomavirus and cervical intraepithelial neoplasia: a systematic review and meta-analysis. (2017) Kelly, Helen; Weiss, Helen; Benavente Moreno, Yolanda; de Sanjose, Silvia; Mayaud, Philippe

A title. (2024) Knight, Gareth folder_zip

Code for "The relative fitness of drug resistant Mycobacterium tuberculosis: a modelling study of household transmission in Lima, Peru". (2018) Knight, Gwen

Data from: The global compendium of Aedes aegypti and Ae. albopictus occurrence. (2015) Kraemer, Moritz U. G.; Sinka, Marianne E.; Duda, Kirsten A.; Mylne, Adrian; Shearer, Freya M.; Brady, Oliver J.; Messina, Jane P.; Barker, Christopher M.; Moore, Chester G.; Carvalho, Roberta G.; Coelho, Giovanini E.; Van Bortel, Wim; Hendrickx, Guy; Schaffner, Francis; Wint, G. R. William; Elyazar, Iqbal R. F.; Teng, Hwa-Jen; Hay, Simon I.

Evidence for Community Transmission of Community-Associated but Not Health-Care-Associated Methicillin-Resistant Staphylococcus Aureus Strains Linked to Social and Material Deprivation: Spatial Analysis of Cross-sectional Data. (2016) Kretzschmar, Mirjam E. E.; Tosas Auguet, Olga; Betley, Jason R.; Stabler, Richard; Patel, Amita; Ioannou, Avgousta; Marbach, Helene; Hearn, Pasco; Aryee, Anna; Goldenberg, Simon D.; Otter, Jonathan A.; Desai, Nergish; Karadag, Tacim; Grundy, Chris; Gaunt, Michael; Cooper, Ben S.; Edgeworth, Jonathan D.; Kypraios, Theodore description

Transmission Dynamics of Zika Virus in Island Populations: A Modelling Analysis of the 2013–14 French Polynesia Outbreak. (2016) Kucharski, Adam J.; Funk, Sebastian; Eggo, Rosalind M.; Mallet, Henri-Pierre; Edmunds, W. John; Nilles, Eric J. description

Reported contacts dataset for "Structure and consistency of self-reported social contact networks in British secondary schools". (2018) Kucharski, Adam J.; Wenham, Clare; Brownlee, Polly; Racon, Lucie; Widmer, Natasha; Eames, Ken T. D.; Conlan, Andrew J. K.

Serological, surveillance and climate data for the 2013/14 DENV-3 outbreak in Central Division. (2018) Kucharski, Adam J; Kama, Mike; Watson, Conall H; Aubry, Maite; Funk, Sebastian; Henderson, Alasdair D; Brady, Oliver J; Vanhomwegen, Jessica; Manuguerra, Jean-Claude; Lau, Colleen L; Edmunds, W John; Aaskov, John; Nilles, Eric James; Cao-Lormeau, Van-Mai; Hué, Stéphane; Hibberd, Martin L

School's Out: Seasonal Variation in the Movement Patterns of School Children. (2015) Kucharski, Adam; Conlan, Andrew J. K.; Eames, Ken grid_on

Characterizing the Transmission Potential of Zoonotic Infections from Minor Outbreaks: Simulation and Inference code. (2015) Kucharski, Adam; Edmunds, John description

Data from: Distinguishing between reservoir exposure and human-to-human transmission for emerging pathogens using case onset data. (2014) Kucharski, Adam; Mills, Harriet; Pinsent, Amy; Fraser, Christophe; Kerkhove, Maria Van; Riley, Steven description

HIV Combination Prevention study - Data at months 0, 9 and 15. (2018) Kuteesa, Monica O.; Weiss, Helen A.; Abaasa, Andrew; Nash, Stephen; Nsubuga, Rebecca N.; Newton, Rob; Seeley, Janet; Kamali, Anatoli description

L

Health facility utilisation changes during the introduction of community case management of malaria in South Western Uganda: An interrupted time series approach. (2015) Lal, Sham; Ndyomugenyi, Richard; Alexander, Neal; Lagarde, Mylene; Paintain, Lucy; Magnussen, Pascal; Chandramoham, Daniel; Clarke, Sian

Saving Lives at Birth; development of a retrospective theory of change, impact framework and prioritised metrics. (2018) Lalli, Marek; Ruysen, Harriet; Blencowe, Hannah; Yee, Kristen; Clune, Karen; DeSilva, Mary; Leffler, Marissa; Hillman, Emily; El-Noush, Haitham; Mulligan, Jo; Murray, Jeffrey C.; Silver, Karlee; Lawn, Joy E.

Data for "Effect of Two or Six Doses 800 mg of Albendazole Every Two Months on Loa loa Microfilaraemia: A Double Blind, Randomized, Placebo-Controlled Trial". (2016) Lammie, Patrick J.; Kamgno, Joseph; Nguipdop-Djomo, Patrick; Gounoue, Raceline; Téjiokem, Mathurin; Kuesel, Annette C. grid_on

Herpes Zoster Vaccine Effectiveness against Incident Herpes Zoster and Post-herpetic Neuralgia in an Older US Population: A Cohort Study. (2013) Langan, Sinead; Smeeth, Liam; Margolis, David J; Thomas, Sara L

Age-Dependent Prevalence of Nasopharyngeal Carriage of Streptococcus pneumoniae before Conjugate Vaccine Introduction: Supporting Information. (2014) Le Polain, Olivier; Flasche, Stefan; Prieto, David; Edmunds, John description

Social contact data for Hong Kong. (2018) Leung, Kathy; Jit, Mark; Lau, Eric H. Y.; Wu, Joseph T.

Stimulating Influenza Vaccination via Prosocial Motives. (2016) Li, Meng; Taylor, Eric G.; Atkins, Katherine E.; Chapman, Gretchen B.; Galvani, Alison P.

Technical appendix to "The hidden health and economic burden of rotavirus gastroenteritis in Malaysia: an estimation using multiple data sources". (2016) Loganathan, Tharani; Ng, Chiu-Wan; Lee, Way-Seah; Jit, Mark

Data for: Identifying human encounters that shape the transmission of Streptococcus pneumoniae and other acute respiratory infections. (2018) le Polain de Waroux, Olivier; Flasche, Stefan; Kucharski, Adam J; Langendorf, Celine; Ndazima, Donny; Mwanga-Amumpaire, Juliet; Grais, Rebecca F; Cohuet, Sandra; Edmunds, W John

M

Read Code List - Arrhythmia. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie description

Code lists for: "Acute kidney injury and infections in patients taking antihypertensive drugs: a self-controlled case series analysis". (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A.

ICD-10 Code List - Arrhythmia. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

ICD-10 Code List - Cardiac Failure. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

ICD-10 Code List - Diabetes Mellitus. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

ICD-10 Code List - ESRD. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

ICD-10 Code List - Hypertension. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

ICD-10 Code List - Ischaemic Heart Disease. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

OPCS Code List - ESRD. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

Read Code List - Cardiac Failure. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. code

Read Code List - ESRD. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

Read Code List - Gastroenteritis. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

Read Code List - Hypertension. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

Read Code List - Ischaemic Heart Disease. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

Read Code List - Lower Respiratory Tract Infection. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

Read Code List - Urinary Tract Infection. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara L; Smeeth, Liam; Tomlinson, Laurie A. description

ICD-10 Code List - Acute Kidney Injury. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara; Smeeth, Liam; Tomlinson, Laurie A. description

Read Code List - Diabetes Mellitus. (2017) Mansfield, Kathryn E.; Douglas, Ian J.; Nitsch, Dorothea; Thomas, Sara; Smeeth, Liam; Tomlinson, Laurie A. code

Ebola Dataset for "Learning Clinical Epidemiology with R" tutorial. (2017) Marks, Michael; Camacho, Anton; Kucharski, Adam; Funk, Sebastian; Edmunds, John; Piot, Peter description

Evaluation of a Rapid Diagnostic Test for Yaws Infection in a Community Surveillance Setting. (2014) Marks, Michael; Goncalves, Adriana; Vahi, Ventis; Sokana, Oliver; Puiahi, Elliot; Zhang, Zaixing; Dalipanda, Tenneth; Bottomley, Christian; Mabey, David; Solomon, Anthony description

R files for: Mathematical Modeling of Programmatic Requirements for Yaws Eradication. (2017) Marks, Michael; Mitja, Oriol; Fitzpatrick, Christopher; Asiedu, Kingsley; Solomon, Anthony W.; Mabey, David; Funk, Sebastian description

Supplement to: "Comparative efficacy of low-dose versus standard-dose azithromycin for patients with yaws: a randomised non-inferiority trial in Ghana and Papua New Guinea". (2018) Marks, Michael; Mitjà, Oriol; Bottomley, Christian; Kwakye, Cynthia; Houinei, Wendy; Bauri, Mathias; Adwere, Paul; Abdulai, Abdul A; Dua, Fredrick; Boateng, Laud; Wangi, James; Ohene, Sally-Ann; Wangnapi, Regina; Simpson, Shirley V; Miag, Helen; Addo, Kennedy K; Basing, Laud A; Danavall, Damien; Chi, Kai H; Pillay, Allan; Ballard, Ronald; Solomon, Anthony W; Chen, Cheng Y; Bieb, Sibauk V; Adu-Sarkodie, Yaw; Mabey, David C W; Asiedu, Kingsley description

Impact of Community Mass Treatment with Azithromycin for Trachoma Elimination on the Prevalence of Yaws. (2015) Marks, Michael; Vahi, Ventis; Sokana, Oliver; Chi, Chi; Puiahi, Elliot; Kilua, Georgina; Pillay, Allan; Dalipanda, Tenneth; Bottomley, Christian; Solomon, Anthony W; Mabey, David

Supplementary material from "Exploring the role of competition induced by non-vaccine serotypes for herd protection following pneumococcal vaccination". (2017) Masala, Giovanni; Lipsitch, M.; Bottomley, Christian; Flasche, Stefan

The Monty Hall problem revisited: Autonomic arousal in an inverted version of the game. (2018) Massad, Eduardo; dos Santos, Paulo Cesar Costa; da Rocha, Armando Freitas; Stupple, Edward J. N.

Empiric tuberculosis treatment in South African primary health care facilities - for whom, where, when and why: Implications for the development of tuberculosis diagnostic tests. (2018) McCarthy, Kerrigan; Fielding, Katherine; Churchyard, Gavin J.; Grant, Alison D.

Model code for "An explanation for the low proportion of tuberculosis that results from transmission between household and known social contacts". (2017) Mccreesh, Nicky description

Spatial dynamics and control of a crop pathogen with mixed-mode transmission. (2017) Mcquaid, Christopher Finn; van den Bosch, Frank; Szyniszewska, Anna; Alicai, Titus; Pariyo, Anthony; Chikoti, Patrick Chiza; Gilligan, Christopher Aidan

Effectiveness of Seasonal Malaria Chemoprevention in children under 10 years of age in Senegal: a stepped-wedge cluster-randomized trial. (2016) Milligan, Paul folder_zip

A comprehensive database of the geographic spread of past human Ebola outbreaks. (2014) Mylne, Adrian; Brady, Oliver J.; Huang, Zhi; Pigott, David M; Golding, Nick; Kraemer, Moritz U.G.; Hay, Simon I.

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Entebbe Mother and Baby Study - Data at one year. (2017) Nash, Stephen; Mentzer, Alexander J.; Lule, Swaib A.; Kizito, Dennison; Smits, Gaby; van der Klis, Fiona R.M.; Elliott, Alison

LAMP minimal dataset. (2016) Nliwasa, Marriott; MacPherson, Peter; Chisala, Palesa; Kamdolozi, Mercy; Khundi, Mcewen Joseph; Kaswaswa, Kruger; Mwapasa, Mphatso; Msefula, Chisomo; Sohn, Hojoon; Flach, Clare; Corbett, Elizabeth description

Chronic Diseases in North-West Tanzania and Southern Uganda. Public Perceptions of Terminologies, Aetiologies, Symptoms and Preferred Management. (2015) Nnko, Soori; Bukenya, Dominic; Kavishe, Bazil Balthazar; Biraro, Samuel; Peck, Robert; Kapiga, Saidi; Grosskurth, Heiner; Seeley, Janet

Absence of Association between Cord Specific Antibody Levels and Severe Respiratory Syncytial Virus (RSV) Disease in Early Infants: A Case Control Study from Coastal Kenya. (2016) Nyiro, Joyce Uchi; Sande, Charles Jumba; Mutunga, Martin; Kiyuka, Patience Kerubo; Munywoki, Patrick Kioo; Scott, John Anthony G.; Nokes, David James description

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A Cluster-Randomized Controlled Trial to Reduce Diarrheal Disease and Dengue Entomological Risk Factors in Rural Primary Schools in Colombia. (2016) Overgaard, Hans J.; Alexander, Neal; Matiz, Maria Ines; Jaramillo, Juan Felipe; Olano, Victor Alberto; Vargas, Sandra; Sarmiento, Diana; Lenhart, Audrey; Stenström, Thor Axel

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Evidence for Host-Bacterial Co-evolution via Genome Sequence Analysis of 480 Thai Mycobacterium tuberculosis Lineage 1 Isolates. (2018) Palittapongarnpim, Prasit; Ajawatanawong, Pravech; Viratyosin, Wasna; Smittipat, Nat; Disratthakit, Areeya; Mahasirimongkol, Surakameth; Yanai, Hideki; Yamada, Norio; Nedsuwan, Supalert; Imasanguan, Worarat; Kantipong, Pacharee; Chaiyasirinroje, Boonchai; Wongyai, Jiraporn; Toyo-oka, Licht; Phelan, Jody; Parkhill, Julian; Clark, Taane G.; Hibberd, Martin L.; Ruengchai, Wuthiwat; Palittapongarnpim, Panawun; Juthayothin, Tada; Tongsima, Sissades; Tokunaga, Katsushi

PREMIUM twelve-month follow-up trial: Clinical Outcomes and Cost-effectiveness dataset from the Healthy Activity Program (HAP) RCT. (2017) Patel, Vikram; Weobong, Benedict; Bhat, Bhargav; McDaid, David; Weiss, Helen

Data for: "Recombination in pe/ppe genes contributes to genetic variation in Mycobacterium tuberculosis lineages". (2016) Phelan, Jody E.; Coll, Francesc; Bergval, Indra; Anthony, Richard M.; Warren, Rob; Sampson, Samantha L.; Gey van Pittius, Nicolaas C.; Glynn, Judith R.; Crampin, Amelia C.; Alves, Adriana; Bessa, Theolis Barbosa; Campino, Susana; Dheda, Keertan; Grandjean, Louis; Hasan, Rumina; Hasan, Zahra; Miranda, Anabela; Moore, David; Panaiotov, Stefan; Perdigao, Joao; Portugal, Isabel; Sheen, Patricia; de Oliveira Sousa, Erivelton; Streicher, Elizabeth M.; van Helden, Paul D.; Viveiros, Miguel; Hibberd, Martin L.; Pain, Arnab; Mcnerney, Ruth; Clark, Taane G.

Whole genome sequences for M.tuberculosis isolates from the TDR strain bank. (2015) Phelan, Jody; Coll, Francesc; Mcnerney, Ruth; Ascher, David B.; Pires, Douglas E. V.; Furnham, Nick; Coeck, Nele; Hill-Cawthorne, Grant A.; Nair, Mridul B.; Mallard, Kim; Ramsay, Andrew; Campino, Susana; Hibberd, Martin; Pain, Arnab; Rigouts, Leen; Clark, Taane description

Data for: "The draft genome of Mycobacterium aurum, a potential model organism for investigating drugs against Mycobacterium tuberculosis and Mycobacterium leprae". (2015) Phelan, Jody; Maitra, Arundhati; Mcnerney, Ruth; Nair, Mridul; Gupta, Antima; Coll, Francesc; Pain, Arnab; Bhakta, Sanjib; Clark, Taane G.

Preservation of Tetherin and CD4 Counter-Activities in Circulating Vpu Alleles despite Extensive Sequence Variation within HIV-1 Infected Individuals. (2017) Pickering, Suzanne; Hué, Stephane; Kim, Eun-Young; Reddy, Susheel; Wolinsky, Steven M.; Neil, Stuart J. D.

Source code for analysis of the zoonotic niche of Ebolavirus. (2014) Pigott, David M; Golding, Nick; Mylne, Adrian; Huang, Zhi; Henry, Andrew J; Weiss, Daniel J; Brady, Oliver J.; Kraemer, Moritz UG; Smith, David L; Moyes, Catherine L; Bhatt, Samir; Gething, Peter W; Horby, Peter W; Bogoch, Isaac I; Brownstein, John S; Mekaru, Sumiko R; Tatem, Andrew J; Khan, Kamran; Hay, Simon I

VCF Viewer (VARB). (2012) Preston, Mark D.; Manske, M; Horner, N; Assefa, S; Campino, S; Auburn, S; Zongo, I; Ouedraogo, JB; Nosten, F; Anderson, T; Clark, Taane

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Ebola virus disease in the Democratic Republic of the Congo, 1976-2014: Figures and Data. (2015) Rosello, Alicia; Mossoko, Mathias; Flasche, Stefan; Vanhoek, Albert; Mbala, Placide; Camacho, Anton; Funk, Sebastian; Kucharski, Adam; Ilunga, Benoit Kebela; Edmunds, John; Piot, Peter; Baguelin, Marc; Tamfum, Jean-Jacques Muyembe description

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Data for: "Estimates of the Burden of Group B Streptococcal Disease Worldwide for Pregnant Women, Stillbirths, and Children". (2017) Seale, Anna C; Bianchi-jassir, Fiorella; Russell, Neal; Kohli-lynch, Maya; Tann, Cally; Hall, Jenny; Madrid, Lola; Blencowe, Hannah; Cousens, Simon; Baker, Carol; Bartlett, Linda; Cutland, Clare; Gravett, Michael; Heath, Paul; Ip, Margaret; Le Doare, Kirsty; Madhi, Shabir; Rubens, Craig E; Saha, Samir; Schrag, Stephanie; Sobanjo-ter Meulen, Ajoke; Vekemans, Johan; Lawn, Joy E html

Global analysis of Plasmodium falciparum histidine-rich protein-2 ( pfhrp2 ) and pfhrp3 gene deletions using whole-genome sequencing data and meta-analysis. (2018) Sepúlveda, Nuno; Phelan, Jody; Diez-Benavente, Ernest; Campino, Susana; Clark, Taane G.; Hopkins, Heidi; Sutherland, Colin; Drakeley, Chris J.; Beshir, Khalid B.

Using Observational Data to Estimate the Effect of Hand Washing and Clean Delivery Kit Use by Birth Attendants on Maternal Deaths after Home Deliveries in Rural Bangladesh, India and Nepal. (2015) Seward, Nadine; Prost, Andrew; Copas, Andrew; Corbin, Marine; Li, Leah; Colbourn, Tim; Osrin, David; Neuman, Melissa; Azad, Kishwar; Kuddus, Abdul; Nair, Nirmala; Tripathy, Prasanta; Manandhar, Dharma; Costello, Anthony; Cortina-Borja, Mario

Additional file 1: of Identifying mixed Mycobacterium tuberculosis infections from whole genome sequence data. (2018) Sobkowiak, Benjamin; Glynn, Judith R.; Houben, Rein M. G. J.; Mallard, Kim; Phelan, Jody E.; Guerra-Assunção, José Afonso; Banda, Louis; Mzembe, Themba; Viveiros, Miguel; McNerney, Ruth; Parkhill, Julian; Crampin, Amelia C.; Clark, Taane G.

Pneumococcal carriage in children and their household contacts six years after introduction of the 13-valent pneumococcal conjugate vaccine in England. (2018) Southern, Jo; Andrews, Nick; Sandu, Pamela; Sheppard, Carmen L.; Waight, Pauline A.; Fry, Norman K.; Vanhoek, Albert Jan; Miller, Elizabeth

Data from: Unravelling the immune signature of Plasmodium falciparum transmission-reducing immunity. (2018) Stone, Will J. R.; Campo, Joseph J.; Ouédraogo, André Lin; Meerstein-Kessel, Lisette; Morlais, Isabelle; Da, Dari; Cohuet, Anna; Nsango, Sandrine; Sutherland, Colin J.; van de Vegte-Bolmer, Marga; Siebelink-Stoter, Rianne; van Gemert, Geert-Jan; Graumans, Wouter; Lanke, Kjerstin; Shandling, Adam D.; Pablo, Jozelyn V.; Teng, Andy A.; Jones, Sophie; de Jong, Roos M.; Fabra-García, Amanda; Bradley, John; Roeffen, Will; Lasonder, Edwin; Gremo, Giuliana; Schwarzer, Evelin; Janse, Chris J.; Singh, Susheel K.; Theisen, Michael; Felgner, Phil; Marti, Matthias; Drakeley, Chris; Sauerwein, Robert; Bousema, Teun; Jore, Matthijs M.

Data for the paper on "Early school failure predicts teenage pregnancy and marriage: a large population-based cohort study in Northern Malawi". (2018) Sunny, Bindu; Glynn, Judith R.; Crampin, Amelia C.; Kanjala, Chifundo

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Second Study of Infectious Intestinal Disease in the United Kingdom, 2008-2009. (2016) Tam, Clarence; Viviani, Laura

Host Immune Responses Differ between M. africanum- and M. tuberculosis-Infected Patients following Standard Anti-tuberculosis Treatment. (2016) Tientcheu, Leopold; Haks, Mariëlle C.; Agbla, Schadrac; Sutherland, Jayne S.; Adetifa, Ifedayo; Donkor, Simon; Quinten, Edwin; Daramy, Mohammed; Antonio, Martin; Kampmann, Beate; Ottenhoff, Tom H. M.; Dockrell, Hazel; Ota, Martin O. description

Why is malaria associated with poverty? Findings from a cohort study in rural Uganda. (2016) Tusting, Lucy S.; Rek, John; Arinaitwe, Emmanuel; Staedke, Sarah G.; Kamya, Moses R.; Cano, Jorge; Bottomley, Christian; Johnston, Deborah; Dorsey, Grant; Lindsay, Steve W.; Lines, Jo grid_on

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Economic evaluation of HIV-exposure Prophylaxis among men who have sex with men in England: Supplementary material. (2017) VanHoek, Albert

Household HIV Testing Uptake among Contacts of TB Patients in South Africa. (2016) Velen, Kavindhran; Lewis, James J; Charalambous, Salome; Page-Shipp, Liesl; Popane, Flora; Churchyard, Gavin J.; Hoffmann, Christopher J. description

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Social mixing in Fiji: Who-eats-with-whom contact patterns and the implications of age and ethnic heterogeneity for disease dynamics in the Pacific Islands. (2017) Watson, Conall H.; Coriakula, Jeremaia; Ngoc, Dung Tran Thi; Flasche, Stefan; Kucharski, Adam J.; Lau, Colleen L.; Thieu, Nga Tran Vu; le Polain de Waroux, Olivier; Rawalai, Kitione; Van, Tan Trinh; Taufa, Mere; Baker, Stephen; Nilles, Eric J.; Kama, Mike; Edmunds, W. John

Data from a cluster randomized trial in Uganda concerning the management of fever cases in public health faclilities. (2016) Webb, Emily

Menstrual Hygiene and Safe Male Circumcision Promotion in Ugandan Schools (MENISCUS). (2018) Weiss, Helen

Data for: "Menstrual health and school absenteeism among adolescent girls in Uganda (MENISCUS): feasibility study". (2018) Weiss, Helen; Nakinyingi-Miiro, Jessica; Sembajjwe, Wilber folder_zip

MENISCUS SMC dataset. (2017) Weiss, Helen; Nakinyingi-Miiro, Jessica; Sembajjwe, Wilber; Gibson, Lorna html

Respondent-Driven Sampling and Total Population Data from a Rural Ugandan Cohort, 2010: Special Licence Access. (2014) White, Richard

Casual and close contact data for buildings in South Africa and Zambia. (2011) White, Richard; Dodd, Peter description

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XPHACTOR datasets. (2018) XPHACTOR study

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S7 Table in "Understanding HIV risks among adolescent girls and young women in informal settlements of Nairobi, Kenya: Lessons for DREAMS". (2018) Ziraba, Abdhalah; Orindi, Benedict; Muuo, Sheru; Floyd, Sian; Birdthistle, Isolde J.; Mumah, Joyce; Osindo, Jane; Njoroge, Pauline; Kabiru, Caroline W.

Understanding HIV risks among adolescent girls and young women in informal settlements of Nairobi, Kenya: Lessons for DREAMS. (2018) Zirba, Abdhalah; Orindi, Benedict; Muuo, Sheru; Floyd, Sian; Birdthistle, Isolde J.; Mumah, Joyce; Osindo, Jane; Njoroge, Pauline; Kabiru, Caroline W.